@incollection{Myers/98, AUTHOR = {Myers, Gene}, TITLE = {A fast bit-vector algorithm for approximate string matching based on dynamic programming}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {1-13}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030777}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Navarro-Raffinot/98, AUTHOR = {Navarro, Gonzalo and Raffinot, Mathieu}, TITLE = {A bit-parallel approach to suffix automata: Fast extended string matching}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {14-33}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030778}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Ziv-Ukelson-Kershenbaum/98, AUTHOR = {Ziv-Ukelson, Michal and Kershenbaum, Aaron}, TITLE = {A dictionary matching algorithm fast on the average for terms of varying length}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {34-54}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030779}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Charras-Lecrog-Pehoushek/98, AUTHOR = {Charras, Christian and Lecrog, Thierry and Pehoushek, Joseph Daniel}, TITLE = {A very fast string matching algorithm for small alphabets and long patterns}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {55-64}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030780}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Risvik/98, AUTHOR = {Risvik, Knut Magne}, TITLE = {Approximate word sequence matching over sparse suffix trees}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {65-79}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030781}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Zhang/98c, AUTHOR = {Zhang, Kaizhong}, TITLE = {Efficient parallel algorithm for the editing distance between ordered trees}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {80-90}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030782}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Myers-Oliva-Guimaraes/98, AUTHOR = {Myers, Eugene W. and Oliva, Paulo and Guimar{\~a}es, Katia}, TITLE = {Reporting exact and approximate regular expression matches}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {91-103}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030783}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Yang-Zhang-Wang-Wang-Shasha/98, AUTHOR = {Yang, Yanling and Zhang, Kaizhong and Wang, Xiong and Wang, Jason T.L. and Shasha, Dennis}, TITLE = {An approximate oracle for distance in metric spaces}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {104-117}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030784}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Fredriksson-Ukkonen/98, AUTHOR = {Fredriksson, Kimmo and Ukkonen, Esko}, TITLE = {A rotation invariant filter for two-dimensional string matching}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {118-125}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030785}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Kim-Kim-Park/98, AUTHOR = {Kim, Dong Kyue and Kim, Yoo Ah and Park, Kunsoo}, TITLE = {Constructing suffix arrays for multi-dimensional matrices}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {126-139}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030786}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Stoye-Gusfield/98, AUTHOR = {Stoye, Jens and Gusfield, Dan}, TITLE = {Simple and flexible detection of contiguous repeats using a suffix tree, preliminary version}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {140-152}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030787}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Pedersen-Lyngso-Hein/98, AUTHOR = {Pedersen, Christian N.S. and Lyngs{\o}, Rune and Hein, Jotun}, TITLE = {Comparison of coding DNA}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {153-173}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030788}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Mal-Wang-Li/98, AUTHOR = {Mal, Bin and Wang, Lusheng and Li, Ming}, TITLE = {Fixed topology alignment with recombination}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {174-188}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030789}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Kececioglu-Zhang/98, AUTHOR = {Kececioglu, John D. and Zhang, Weiqing}, TITLE = {Aligning alignments}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {189-208}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030790}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Amir-Landau-Lewenstein-Lewenstein/98a, AUTHOR = {Amir, Amihood and Landau, Gad M. and Lewenstein, Moshe and Lewenstein, Noa}, TITLE = {Efficient special cases of pattern matching with swaps}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {209-220}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030791}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{Hua-Jiang-Wu/98, AUTHOR = {Hua, Yufang and Jiang, Tao and Wu, Bin}, TITLE = {Aligning DNA sequences to minimize the change in protein}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {221-234}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030792}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, } @incollection{El-Mabrouk-Nadeau-Sankoff/98, AUTHOR = {El-Mabrouk, Nadia and Nadeau, Joseph H. and Sankoff, David}, TITLE = {Genome halving}, BOOKTITLE = {Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching, CPM'98 (Piscataway, New Jersey, USA, July 20-22, 1998)}, SERIES = {LNCS}, VOLUME = {1448}, PAGES = {235-250}, YEAR = {1998}, EDITOR = {Farach-Colton, Martin}, URL = {http://dx.doi.org/10.1007/BFb0030793}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Barcelona-Budapest-Hong Kong-London-Milan-Paris-Singapore-Tokyo}, }