@incollection{Tannier-Sagot/04, AUTHOR = {Tannier, Eric and Sagot, Marie-France}, TITLE = {Sorting by reversals in subquadratic time}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {1-13}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/37u8ckke7jkj7ha5}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Barzuza-Beckmann-Shamir-Peer/04, AUTHOR = {Barzuza, Tamar and Beckmann, Jacques S. and Shamir, Ron and Pe'er, Itsik}, TITLE = {Computational problems in perfect phylogeny haplotyping: Xor-genotypes and tag SNPs}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {14-31}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/lfv09pmjxbkcak3p}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Swidan-Bender-Ge-He-Hu-Pinter/04, AUTHOR = {Swidan, Firas and Bender, Michael A. and Ge, Dongdong and He, Simai and Hu, Haodong and Pinter, Ron Y.}, TITLE = {Sorting by length-weighted reversals: Dealing with signs and circularity}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {32-46}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/1pf11h40y6w14wy4}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Xu-Brown-Li-Ma/04, AUTHOR = {Xu, Jinbo and Brown, Daniel G. and Li, Ming and Ma, Bin}, TITLE = {Optimizing multiple spaced seeds for homology search}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {47-58}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/2vknd8t9bwtf0f69}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Pinter-Rokhlenko-Tsur-Ziv-Ukelson/04, AUTHOR = {Pinter, Ron Y. and Rokhlenko, Oleg and Tsur, Dekel and Ziv-Ukelson, Michal}, TITLE = {Approximate labelled subtree homeomorphism}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {59-73}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/y558jmggt26fww2a}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Janson-Lonardi-Szpankowski/04, AUTHOR = {Janson, Svante and Lonardi, Stefano and Szpankowski, Wojciech}, TITLE = {On the average sequence complexity}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {74-88}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/gkdavq7y1nw5gw2d}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Suga-Shimozono/04, AUTHOR = {Suga, Tomoaki and Shimozono, Shinichi}, TITLE = {Approximate point set pattern matching on sequences and planes}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {89-101}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/5rvktber496kpcqj}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Lonardi-Szpankowski-Yang/04, AUTHOR = {Lonardi, Stefano and Szpankowski, Wojciech and Yang, Qiaofeng}, TITLE = {Finding biclusters by random projections}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {102-116}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/86rvl8w90863pqe3}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Gasieniec-Kolpakov/04, AUTHOR = {G{\c{a}}sieniec, Leszek and Kolpakov, Roman}, TITLE = {Real-time string matching in sublinear space}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {117-129}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/81hx2dygw0kj3hn2}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Jiao-Xu-Li/04, AUTHOR = {Jiao, Yishan and Xu, Jingyi and Li, Ming}, TITLE = {On the $k$-closest substring and $k$-consensus pattern problems}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {130-144}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/ethqba4m8wvhb3mh}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Crochemore-Epifanio-Grossi-Mignosi/04, AUTHOR = {Crochemore, Maxime and Epifanio, Chiara and Grossi, Roberto and Mignosi, Filippo}, TITLE = {A trie-based approach for compacting automata}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {145-158}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/3pj27txrqmdlvttr}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Geary-Rahman-Raman-Raman/04, AUTHOR = {Geary, Richard F. and Rahman, Naila and Raman, Rajeev and Raman, Venkatesh}, TITLE = {A simple optimal representation for balanced parentheses}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {159-172}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/p5mxuq7kx5nvaj9g}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Landau-Myers-Ziv-Ukelson/04, AUTHOR = {Landau, Gad M. and Myers, Eugene and Ziv-Ukelson, Michal}, TITLE = {Two algorithms for LCS consecutive suffix alignment}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {173-193}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/day67cmby995y8gh}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Bansal-Cieliebak-Liptak/04, AUTHOR = {Bansal, Nikhil and Cieliebak, Mark and Lipt{\'a}k, Zsuzsanna}, TITLE = {Efficient algorithms for finding submasses in weighted strings}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {194-204}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/v6r1t0lrxc7p999j}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Berry-Nicolas/04, AUTHOR = {Berry, Vincent and Nicolas, Fran{\c{c}}ois}, TITLE = {Maximum agreement and compatible supertrees}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {205-219}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/12c7y19avxpk5hnm}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Dessmark-Jansson-Lingas-Lundell/04, AUTHOR = {Dessmark, Anders and Jansson, Jesper and Lingas, Andrzej and Lundell, Eva-Marta}, TITLE = {Polynomial-time algorithms for the ordered maximum agreement subtree problem}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {220-229}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/guj5j068wpqjxh5v}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Gupta-Manuch-Stacho-Zhu/04, AUTHOR = {Gupta, Arvind and Ma{\v{n}}uch, J{\'a}n and Stacho, Ladislav and Zhu, Chenchen}, TITLE = {Small phylogeny problem: Character evolution trees}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {230-243}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/aql3bf5c4v2nj1jm}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Berman-DasGupta-Mubayi-Sloan-Turan-Zhang/04, AUTHOR = {Berman, Piotr and DasGupta, Bhaskar and Mubayi, Dhruv and Sloan, Robert and Tur{\'a}n, Gy{\"o}rgy and Zhang, Yi}, TITLE = {The protein sequence design problem in canonical model on 2D and 3D lattices}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {244-253}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/up1mtyr6dv8gumnv}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Davydov-Batzoglou/04, AUTHOR = {Davydov, Eugene and Batzoglou, Serafim}, TITLE = {A computational model for RNA multiple structural alignment}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {254-269}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/clcg81hnp2cm207m}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Backofen-Busch/04, AUTHOR = {Backofen, Rolf and Busch, Anke}, TITLE = {Computational design of new and recombinant selenoproteins}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {270-284}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/qj6pp7tlhqhh5hbu}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Choi-Goyal/04, AUTHOR = {Choi, Vicky and Goyal, Navin}, TITLE = {A combinatorial shape matching algorithm for rigid protein docking}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {285-296}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/0lty0k19fyc5pgap}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Kucherov-Noe-Roytberg/04, AUTHOR = {Kucherov, Gregory and No{\'e}, Laurent and Roytberg, Mikhail}, TITLE = {Multi-seed lossless filtration}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {297-310}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/hrw7dvbn8ua9q6ly}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Blin-Fertin-Vialette/04, AUTHOR = {Blin, Guillaume and Fertin, Guillaume and Vialette, St{\'e}phane}, TITLE = {New results for the 2-interval pattern problem}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {311-322}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/1m1ydj1eqtrdkx9r}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Li-Qi-Wang-Zhu/04, AUTHOR = {Li, Guojun and Qi, Xingqin and Wang, Xiaoli and Zhu, Binhai}, TITLE = {A linear-time algorithm for computing translocation distance between signed genomes}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {323-332}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/27vdw4vtrwdvlmgu}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Efraty-Landau/04, AUTHOR = {Efraty, Nadav and Landau, Gad M.}, TITLE = {Sparse normalized local alignment}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {333-346}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/nf5hp3mlb5xjq7vg}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Schmidt-Stoye/04, AUTHOR = {Schmidt, Thomas and Stoye, Jens}, TITLE = {Quadratic time algorithms for finding common intervals in two and more sequences}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {347-358}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/1j5vd96h7uwdru6p}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Habib-Paul-Raffinot/04, AUTHOR = {Habib, Michel and Paul, Christophe and Raffinot, Mathieu}, TITLE = {Maximal common connected sets of interval graphs}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {359-372}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/3q748wergyuf1201}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Csuros/04, AUTHOR = {Cs{\H{u}}r{\"o}s, Mikl{\'o}s}, TITLE = {Performing local similarity searches with variable length seeds}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {373-387}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/r522bxk567yh1h5b}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Bergeron-Mixtacki-Stoye/04, AUTHOR = {Bergeron, Anne and Mixtacki, Julia and Stoye, Jens}, TITLE = {Reversal distance without hurdles and fortresses}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {388-399}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/b3l71bytqcc3jg23}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Baeza-Yates/04, AUTHOR = {Baeza-Yates, Ricardo}, TITLE = {A fast set intersection algorithm for sorted sequences}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {400-408}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/yth9h90y94n10l7e}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Amir-Kapah-Tsur/04, AUTHOR = {Amir, Amihood and Kapah, Oren and Tsur, Dekel}, TITLE = {Faster two dimensional pattern matching with rotations}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {409-419}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/tl9dqble4946dfb1}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Makinen-Navarro/04, AUTHOR = {M{\"a}kinen, Veli and Navarro, Gonzalo}, TITLE = {Compressed compact suffix arrays}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {420-433}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/k7rl2thce9cm3ylu}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Huynh-Hon-Lam-Sung/04, AUTHOR = {Huynh, Trinh N.D. and Hon, Wing-Kai and Lam, Tak-Wah and Sung, Wing-Kin}, TITLE = {Approximate string matching using compressed suffix arrays}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {434-444}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/08yvk0d616q797dx}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Chan-Hon-Lam/04, AUTHOR = {Chan, Ho-Leung and Hon, Wing-Kai and Lam, Tak-Wah}, TITLE = {Compressed index for a dynamic collection of texts}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {445-456}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/1wv80xnpjlqdlwlx}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Fredriksson-Navarro/04, AUTHOR = {Fredriksson, Kimmo and Navarro, Gonzalo}, TITLE = {Improved single and multiple approximate string matching}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {457-471}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/p9bqgvpjbe5l8m3n}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, } @incollection{Maass/04, AUTHOR = {Maa{\ss}, Moritz G.}, TITLE = {Average-case analysis of approximate trie search}, BOOKTITLE = {Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM'2004 (Istanbul, Turkey, July 5-7, 2004)}, SERIES = {LNCS}, VOLUME = {3109}, PAGES = {472-483}, YEAR = {2004}, EDITOR = {Sahinalp, Suleyman Cenk and Muthukrishnan, S. and Dogrusoz, Ugur}, URL = {http://www.springerlink.com/content/uxvcqt5u9kc5nqct}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg-New York-Hong Kong-London-Milan-Paris-Tokyo}, }