@incollection{Gusfield/08, AUTHOR = {Gusfield, Dan}, TITLE = {ReCombinatorics: Combinatorial algorithms for studying the history of recombination in populations}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {1-2}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_1}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Munro/08, AUTHOR = {Munro, J. Ian}, TITLE = {Lower bounds for succinct data structures}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {3-3}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_2}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Raghavan/08, AUTHOR = {Raghavan, Prabhakar}, TITLE = {The changing face of web search}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {4-4}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_3}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Hundt-Liskiewicz/08, AUTHOR = {Hundt, Christian and Li{\'s}kiewicz, Maciej}, TITLE = {Two-dimensional pattern matching with combined scaling and rotation}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {5-17}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_4}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Kolpakov-Kucherov/08, AUTHOR = {Kolpakov, Roman and Kucherov, Gregory}, TITLE = {Searching for gapped palindromes}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {18-30}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_5}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Betzler-Fellows-Komusiewicz-Niedermeier/08, AUTHOR = {Betzler, Nadja and Fellows, Michael R. and Komusiewicz, Christian and Niedermeier, Rolf}, TITLE = {Parameterized algorithms and hardness results for some graph motif problems}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {31-43}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_6}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Li-Bu-Xu-Li/08, AUTHOR = {Li, Shuai Cheng and Bu, Dongbo and Xu, Jinbo and Li, Ming}, TITLE = {Finding largest well-predicted subset of protein structure models}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {44-55}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_7}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Bergeron-Mixtacki-Stoye/08a, AUTHOR = {Bergeron, Anne and Mixtacki, Julia and Stoye, Jens}, TITLE = {HP distance via double cut and join distance}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {56-68}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_8}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Mohl-Will-Backofen/08, AUTHOR = {M{\"o}hl, Mathias and Will, Sebastian and Backofen, Rolf}, TITLE = {Fixed parameter tractable alignment of RNA structures including arbitrary pseudoknots}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {69-81}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_9}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Gasieniec-Li-Zhang/08, AUTHOR = {G{\c{a}}sieniec, Leszek and Li, Cindy Y. and Zhang, Meng}, TITLE = {Faster algorithm for the set variant of the string barcoding problem}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {82-94}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_10}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Marschall-Rahmann/08, AUTHOR = {Marschall, Tobias and Rahmann, Sven}, TITLE = {Probabilistic arithmetic automata and their application to pattern matching statistics}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {95-106}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_11}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Fayolle/08, AUTHOR = {Fayolle, Julien}, TITLE = {Analysis of the size of antidictionary in DCA}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {107-117}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_12}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Amir-Aumann-Kapah-Levy-Porat/08, AUTHOR = {Amir, Amihood and Aumann, Yonatan and Kapah, Oren and Levy, Avivit and Porat, Ely}, TITLE = {Approximate string matching with address bit errors}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {118-129}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_13}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Kiwi-Navarro-Telha/08, AUTHOR = {Kiwi, Marcos and Navarro, Gonzalo and Telha, Claudio}, TITLE = {On-line approximate string matching with bounded errors}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {130-142}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_14}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Clifford-Efremenko-Porat-Porat/08, AUTHOR = {Clifford, Rapha{\"e}l and Efremenko, Klim and Porat, Benny and Porat, Ely}, TITLE = {A black box for online approximate pattern matching}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {143-151}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_15}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Fischer-Makinen-Navarro/08, AUTHOR = {Fischer, Johannes and M{\"a}kinen, Veli and Navarro, Gonzalo}, TITLE = {An(other) entropy-bounded compressed suffix tree}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {152-165}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_16}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Nitto-Venturini/08, AUTHOR = {Nitto, Igor and Venturini, Rossano}, TITLE = {On compact representations of all-pairs-shortest-path-distance matrices}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {166-177}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_17}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Nong-Zhang-Chan/08, AUTHOR = {Nong, Ge and Zhang, Sen and Chan, Wai Hong}, TITLE = {Computing inverse ST in linear complexity}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {178-190}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_18}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Russo-Navarro-Oliveira/08, AUTHOR = {Russo, Lu{\'{i}}s M.S. and Navarro, Gonzalo and Oliveira, Arlindo}, TITLE = {Dynamic fully-compressed suffix trees}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {191-203}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_19}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Farach-Colton-Huang/08, AUTHOR = {Farach-Colton, Martin and Huang, Yang}, TITLE = {A linear delay algorithm for building concept lattices}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {204-216}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_20}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Fraczak-Rytter-Yazdani/08, AUTHOR = {Fraczak, Wojciech and Rytter, Wojciech and Yazdani, Mohammadreza}, TITLE = {Matching integer intervals by minimal sets of binary words with don't cares}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {217-229}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_21}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Mozes-Tsur-Weimann-Ziv-Ukelson/08, AUTHOR = {Mozes, Shay and Tsur, Dekel and Weimann, Oren and Ziv-Ukelson, Michal}, TITLE = {Fast algorithms for computing tree LCS}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {230-243}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_22}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Ma/08, AUTHOR = {Ma, Bin}, TITLE = {Why greed works for shortest common superstring problem}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {244-254}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_23}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Gotthilf-Hermelin-Lewenstein/08, AUTHOR = {Gotthilf, Zvi and Hermelin, Danny and Lewenstein, Moshe}, TITLE = {Constrained LCS: Hardness and approximation}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {255-262}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_24}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Xiao-Wang-Liu-Jiang/08, AUTHOR = {Xiao, Jing and Wang, Lusheng and Liu, Xiaowen and Jiang, Tao}, TITLE = {Finding additive biclusters with random background}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {263-276}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_25}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Arroyuelo/08, AUTHOR = {Arroyuelo, Diego}, TITLE = {An improved succinct representation for dynamic $k$-ary trees}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {277-289}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_26}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Crochemore-Ilie-Tinta/08, AUTHOR = {Crochemore, Maxime and Ilie, Lucian and Tinta, Liviu}, TITLE = {Towards a solution to the ``runs'' conjecture}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {290-302}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_27}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, } @incollection{Keller-Kopelowitz-Lewenstein/08, AUTHOR = {Keller, Orgad and Kopelowitz, Tsvi and Lewenstein, Moshe}, TITLE = {On the longest common parameterized subsequence}, BOOKTITLE = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM'2008 (Pisa, Italy, June 18-20, 2008)}, SERIES = {LNCS}, VOLUME = {5029}, PAGES = {303-315}, YEAR = {2008}, EDITOR = {Ferragina, Paolo and Landau, Gad M.}, URL = {http://dx.doi.org/10.1007/978-3-540-69068-9_28}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin-Heidelberg}, }