@incollection{Alipanahi-Krislock-Ghodsi-Wolkowicz-Donaldson-Li/12,
AUTHOR = {Alipanahi, Babak and Krislock, Nathan and Ghodsi, Ali and Wolkowicz, Henry and Donaldson, Logan and Li, Ming},
TITLE = {Protein structure by semidefinite facial reduction},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {1-11},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/g83g462555494336/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Bercovici-Rodriguez-Elmore-Batzoglou/12,
AUTHOR = {Bercovici, Sivan and Rodriguez, Jesse M. and Elmore, Megan and Batzoglou, Serafim},
TITLE = {Ancestry inference in complex admixtures via variable-length Markov chain linkage models},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {12-28},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/l723x431350v7680/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Canzar-El-Kebir-Pool-Elbassioni-Malde-Mark-Geerke/12,
AUTHOR = {Canzar, Stefan and El-Kebir, Mohammed and Pool, Ren{\'e} and Elbassioni, Khaled and Malde, Alpesh K. and Mark, Alan E. and Geerke, Daan P.},
TITLE = {Charge group partitioning in biomolecular simulation},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {29-43},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/j77v62764172668r/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Corrada_Bravo/12,
AUTHOR = {Corrada Bravo, Hector},
TITLE = {Increased methylation variation in epigenetic domains across cancer types},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {44-44},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/h7g15504434g4274/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{DeBlasio-Wheeler-Kececioglu/12,
AUTHOR = {DeBlasio, Dan F. and Wheeler, Travis J. and Kececioglu, John D.},
TITLE = {Estimating the accuracy of multiple alignments and its use in parameter advising},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {45-59},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/j688356645247844/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Francis-Fertig/12,
AUTHOR = {Francis, Matthew R. and Fertig, Elana J.},
TITLE = {Quantifying the dynamics of coupled networks of switches and oscillators},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {60-61},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/u100u13k5r335666/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Gymrek-Golan-Rosset-Erlich/12,
AUTHOR = {Gymrek, Melissa and Golan, David and Rosset, Saharon and Erlich, Yaniv},
TITLE = {lobSTR: A short tandem repeat profiler for personal genomes},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {62-63},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/k028428807337473/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{He-Han-Eskin/12,
AUTHOR = {He, Dan and Han, Buhm and Eskin, Eleazar},
TITLE = {Hap-seq: An optimal algorithm for haplotype phasing with imputation using sequencing data},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {64-78},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/l7735t0852124u47/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{He-Vandin-Pandurangan-Bailey-Kellogg/12,
AUTHOR = {He, Lu and Vandin, Fabio and Pandurangan, Gopal and Bailey-Kellogg, Chris},
TITLE = {{\sc Ballast}: A ball-based algorithm for structural motifs},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {79-93},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/v672l2t166726025/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Holloway-Swenson-Ardell-El-Mabrouk/12,
AUTHOR = {Holloway, Patrick and Swenson, Krister and Ardell, David and El-Mabrouk, Nadia},
TITLE = {Evolution of genome organization by duplication and loss: An alignment approach},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {94-112},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/c21xptpv8141k152/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Holtby-Li-Li/12,
AUTHOR = {Holtby, Daniel and Li, Shuai Cheng and Li, Ming},
TITLE = {LoopWeaver --- Loop modeling by the weighted scaling of verified proteins},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {113-126},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/v012061706252413/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Huang-Hu-Jones-MacLeod-Chiang-Liu-Prins-Liu/12,
AUTHOR = {Huang, Yan and Hu, Yin and Jones, Corbin D. and MacLeod, James N. and Chiang, Derek Y. and Liu, Yufeng and Prins, Jan F. and Liu, Jinze},
TITLE = {A robust method for transcript quantification with RNA-seq data},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {127-147},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/w4455106040554u4/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Kinsella-Bafna/12,
AUTHOR = {Kinsella, Marcus and Bafna, Vineet},
TITLE = {Modeling the breakage-fusion-bridge mechanism: Combinatorics and cancer genomics},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {148-162},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/d47251225220158x/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Li-Li-Burns-Borodovsky-Robinson-Ma/12,
AUTHOR = {Li, Yang and Li, Hong-Mei and Burns, Paul and Borodovsky, Mark and Robinson, Gene E. and Ma, Jian},
TITLE = {TrueSight: Self-training algorithm for splice junction detection using RNA-seq},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {163-164},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/34814w0671537104/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Lin-Ward-Skiena/12,
AUTHOR = {Lin, Yaw-Ling and Ward, Charles and Skiena, Steven},
TITLE = {Synthetic sequence design for signal location search},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {165-179},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/eq1432k614g8p7n7/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Marti-Renom/12,
AUTHOR = {Marti-Renom, Marc A.},
TITLE = {The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {180-180},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/7066135836272636/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{McPherson-Wu-Wyatt-Shah-Collins-Sahinalp/12,
AUTHOR = {McPherson, Andrew and Wu, Chunxiao and Wyatt, Alexander and Shah, Sohrab and Collins, Colin and Sahinalp, S. Cenk},
TITLE = {Discovery of complex genomic rearrangements in cancer using high-throughput sequencing},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {181-182},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/f55632310k521642/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Murali-Dyer-Badger-Tyler-Katze/12,
AUTHOR = {Murali, T.M. and Dyer, Matthew D. and Badger, David and Tyler, Brett M. and Katze, Michael G.},
TITLE = {Network-based prediction and analysis of HIV dependency factors},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {183-183},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/p733047745627115/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Parker-Griswold-Bailey-Kellogg/12,
AUTHOR = {Parker, Andrew S. and Griswold, Karl E. and Bailey-Kellogg, Chris},
TITLE = {Structure-guided deimmunization of therapeutic proteins},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {184-198},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/1906807174v1l376/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Pervouchine-Khrameeva-Pichugina-Nikolaienko-Gelfand-Rubtsov-Mironov/12,
AUTHOR = {Pervouchine, Dmitri and Khrameeva, Ekaterina and Pichugina, Marina and Nikolaienko, Olexii and Gelfand, Mikhail and Rubtsov, Petr and Mironov, Andrei},
TITLE = {Evidence for widespread association of mammalian splicing and conserved long-range RNA structures},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {199-199},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/1018718v85077038/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Pham-Antipov-Sirotkin-Tesler-Pevzner-Alekseyev/12,
AUTHOR = {Pham, Son K. and Antipov, Dmitry and Sirotkin, Alexander and Tesler, Glenn and Pevzner, Pavel A. and Alekseyev, Max A.},
TITLE = {Pathset graphs: A novel approach for comprehensive utilization of paired reads in genome assembly},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {200-212},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/h676182617687122/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Rauf-Rasche-Nicolas-Bocker/12,
AUTHOR = {Rauf, Imran and Rasche, Florian and Nicolas, Fran{\c{c}}ois and B{\"o}cker, Sebastian},
TITLE = {Finding maximum colorful subtrees in practice},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {213-223},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/j147r771880655l3/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Roch-Snir/12,
AUTHOR = {Roch, Sebastien and Snir, Sagi},
TITLE = {Recovering the tree-like trend of evolution despite extensive lateral genetic transfer: A probabilistic analysis},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {224-238},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/k03844u5q7561j17/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Sahraeian-Yoon/12a,
AUTHOR = {Sahraeian, Sayed Mohammad Ebrahim and Yoon, Byung-Jun},
TITLE = {RESQUE: Network reduction using semi-Markov random walk scores for efficient querying of biological networks},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {239-240},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/kk4094063g23p56p/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
PCOMMENT = {extended abstract},
}
@incollection{Salari-Kimchi-Sarfaty-Gottesman-Przytycka/12,
AUTHOR = {Salari, Raheleh and Kimchi-Sarfaty, Chava and Gottesman, Michael M. and Przytycka, Teresa M.},
TITLE = {Detecting SNP-induced structural changes in RNA: Application to disease studies},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {241-243},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/b4073522n1718uw7/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Sankoff-Zheng-Wang/12,
AUTHOR = {Sankoff, David and Zheng, Chunfang and Wang, Baoyong},
TITLE = {A model for biased fractionation after whole genome duplication},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {244-244},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/33983053471mgm02/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Schmiedl-Mohl-Heyne-Amit-Landau-Will-Backofen/12,
AUTHOR = {Schmiedl, Christina and M{\"o}hl, Mathias and Heyne, Steffen and Amit, Mika and Landau, Gad M. and Will, Sebastian and Backofen, Rolf},
TITLE = {Exact pattern matching for RNA structure ensembles},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {245-260},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/vr1401918532173u/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Sharan-Karp/12,
AUTHOR = {Sharan, Roded and Karp, Richard M.},
TITLE = {Reconstructing Boolean models of signaling},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {261-271},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/vr8062200k1n57q8/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Song-Ren-Zhai-Liu-Deng-Sun/12,
AUTHOR = {Song, Kai and Ren, Jie and Zhai, Zhiyuan and Liu, Xuemei and Deng, Minghua and Sun, Fengzhu},
TITLE = {Alignment-free sequence comparison based on next generation sequencing reads},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {272-285},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/d1t028515323301p/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
PCOMMENT = {extended abstract},
}
@incollection{Stark/12,
AUTHOR = {Stark, Rory},
TITLE = {Differential oestrogen receptor binding is associated with clinical outcome in breast cancer},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {286-286},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/6856574317167066/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Tuncbag-Braunstein-Pagnani-Huang-Chayes-Borgs-Zecchina-Fraenkel/12,
AUTHOR = {Tuncbag, Nurcan and Braunstein, Alfredo and Pagnani, Andrea and Huang, Shao-Shan Carol and Chayes, Jennifer and Borgs, Christian and Zecchina, Riccardo and Fraenkel, Ernest},
TITLE = {Simultaneous reconstruction of multiple signaling pathways via the prize-collecting Steiner forest problem},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {287-301},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/7916442v21064144/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Wang-Huang-Ding/12,
AUTHOR = {Wang, Hua and Huang, Heng and Ding, Chris},
TITLE = {Function-function correlated multi-label protein function prediction over interaction networks},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {302-313},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/p453g67709282l35/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Wang-Huang-Ding-Nie/12,
AUTHOR = {Wang, Hua and Huang, Heng and Ding, Chris and Nie, Feiping},
TITLE = {Predicting protein-protein interactions from multimodal biological data sources via nonnegative matrix tri-factorization},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {314-325},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/47381115517622u1/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Wang-Hormozdiari-Yang-Halperin-Eskin/12,
AUTHOR = {Wang, Zhanyong and Hormozdiari, Farhad and Yang, Wen-Yun and Halperin, Eran and Eskin, Eleazar},
TITLE = {CNVeM: Copy number variation detection using uncertainty of read mapping},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {326-340},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/p622187l42v41243/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Will-Yu-Berger/12,
AUTHOR = {Will, Sebastian and Yu, Michael and Berger, Bonnie},
TITLE = {Structure-based whole genome realignment reveals many novel non-coding RNAs},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {341-341},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/g43u14356t877g64/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Zagordi-Topfer-Prabhakaran-Roth-Halperin-Beerenwinkel/12,
AUTHOR = {Zagordi, Osvaldo and T{\"o}pfer, Armin and Prabhakaran, Sandhya and Roth, Volker and Halperin, Eran and Beerenwinkel, Niko},
TITLE = {Probabilistic inference of viral quasispecies subject to recombination},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {342-354},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/152r51p123176766/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}
@incollection{Zhang-Chang-Hugo-Cheung-Sung/12,
AUTHOR = {Zhang, ZhiZhuo and Chang, Cheng Wei and Hugo, Willy and Cheung, Edwin and Sung, Wing-Kin},
TITLE = {Simultaneously learning DNA motif along with its position and sequence rank preferences through EM algorithm},
BOOKTITLE = {Proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2012 (Barcelona, Spain, April 21-24, 2012)},
SERIES = {LNCS},
VOLUME = {7262},
PAGES = {355-370},
YEAR = {2012},
EDITOR = {Chor, Benny},
URL = {http://springerlink.metapress.com/content/92v75w27wp255172/fulltext.pdf},
PUBLISHER = {Springer-Verlag},
ADDRESS = {Berlin-Heidelberg},
}