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Technische Universität München
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Protein structure by semidefinite facial reduction
Babak Alipanahi
,
Nathan Krislock
,
Ali Ghodsi
,
Henry Wolkowicz
,
Logan Donaldson
,
Ming Li
Lecture Notes in Computer Science
7262
, 2012, pp. 1-11
Ancestry inference in complex admixtures via variable-length Markov chain linkage models
Sivan Bercovici
,
Jesse M. Rodriguez
,
Megan Elmore
,
Serafim Batzoglou
Lecture Notes in Computer Science
7262
, 2012, pp. 12-28
Charge group partitioning in biomolecular simulation
Stefan Canzar
,
Mohammed El-Kebir
,
René Pool
,
Khaled Elbassioni
,
Alpesh K. Malde
,
Alan E. Mark
,
Daan P. Geerke
Lecture Notes in Computer Science
7262
, 2012, pp. 29-43
Increased methylation variation in epigenetic domains across cancer types
Hector Corrada Bravo
Lecture Notes in Computer Science
7262
, 2012, pp. 44-44
Estimating the accuracy of multiple alignments and its use in parameter advising
Dan F. DeBlasio
,
Travis J. Wheeler
,
John D. Kececioglu
Lecture Notes in Computer Science
7262
, 2012, pp. 45-59
Quantifying the dynamics of coupled networks of switches and oscillators
Matthew R. Francis
,
Elana J. Fertig
Lecture Notes in Computer Science
7262
, 2012, pp. 60-61
lobSTR: A short tandem repeat profiler for personal genomes
Melissa Gymrek
,
David Golan
,
Saharon Rosset
,
Yaniv Erlich
Lecture Notes in Computer Science
7262
, 2012, pp. 62-63
Hap-seq: An optimal algorithm for haplotype phasing with imputation using sequencing data
Dan He
,
Buhm Han
,
Eleazar Eskin
Lecture Notes in Computer Science
7262
, 2012, pp. 64-78
Ballast
: A ball-based algorithm for structural motifs
Lu He
,
Fabio Vandin
,
Gopal Pandurangan
,
Chris Bailey-Kellogg
Lecture Notes in Computer Science
7262
, 2012, pp. 79-93
Evolution of genome organization by duplication and loss: An alignment approach
Patrick Holloway
,
Krister Swenson
,
David Ardell
,
Nadia El-Mabrouk
Lecture Notes in Computer Science
7262
, 2012, pp. 94-112
LoopWeaver - Loop modeling by the weighted scaling of verified proteins
Daniel Holtby
,
Shuai Cheng Li
,
Ming Li
Lecture Notes in Computer Science
7262
, 2012, pp. 113-126
A robust method for transcript quantification with RNA-seq data
Yan Huang
,
Yin Hu
,
Corbin D. Jones
,
James N. MacLeod
,
Derek Y. Chiang
,
Yufeng Liu
,
Jan F. Prins
,
Jinze Liu
Lecture Notes in Computer Science
7262
, 2012, pp. 127-147
Modeling the breakage-fusion-bridge mechanism: Combinatorics and cancer genomics
Marcus Kinsella
,
Vineet Bafna
Lecture Notes in Computer Science
7262
, 2012, pp. 148-162
TrueSight: Self-training algorithm for splice junction detection using RNA-seq
Yang Li
,
Hong-Mei Li
,
Paul Burns
,
Mark Borodovsky
,
Gene E. Robinson
,
Jian Ma
Lecture Notes in Computer Science
7262
, 2012, pp. 163-164
Synthetic sequence design for signal location search
Yaw-Ling Lin
,
Charles Ward
,
Steven Skiena
Lecture Notes in Computer Science
7262
, 2012, pp. 165-179
The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation
Marc A. Marti-Renom
Lecture Notes in Computer Science
7262
, 2012, pp. 180-180
Discovery of complex genomic rearrangements in cancer using high-throughput sequencing
Andrew McPherson
,
Chunxiao Wu
,
Alexander Wyatt
,
Sohrab Shah
,
Colin Collins
,
S. Cenk Sahinalp
Lecture Notes in Computer Science
7262
, 2012, pp. 181-182
Network-based prediction and analysis of HIV dependency factors
T.M. Murali
,
Matthew D. Dyer
,
David Badger
,
Brett M. Tyler
,
Michael G. Katze
Lecture Notes in Computer Science
7262
, 2012, pp. 183-183
Structure-guided deimmunization of therapeutic proteins
Andrew S. Parker
,
Karl E. Griswold
,
Chris Bailey-Kellogg
Lecture Notes in Computer Science
7262
, 2012, pp. 184-198
Evidence for widespread association of mammalian splicing and conserved long-range RNA structures
Dmitri Pervouchine
,
Ekaterina Khrameeva
,
Marina Pichugina
,
Olexii Nikolaienko
,
Mikhail Gelfand
,
Petr Rubtsov
,
Andrei Mironov
Lecture Notes in Computer Science
7262
, 2012, pp. 199-199
Pathset graphs: A novel approach for comprehensive utilization of paired reads in genome assembly
Son K. Pham
,
Dmitry Antipov
,
Alexander Sirotkin
,
Glenn Tesler
,
Pavel A. Pevzner
,
Max A. Alekseyev
Lecture Notes in Computer Science
7262
, 2012, pp. 200-212
Finding maximum colorful subtrees in practice
Imran Rauf
,
Florian Rasche
,
François Nicolas
,
Sebastian Böcker
Lecture Notes in Computer Science
7262
, 2012, pp. 213-223
Recovering the tree-like trend of evolution despite extensive lateral genetic transfer: A probabilistic analysis
Sebastien Roch
,
Sagi Snir
Lecture Notes in Computer Science
7262
, 2012, pp. 224-238
RESQUE: Network reduction using semi-Markov random walk scores for efficient querying of biological networks
Sayed Mohammad Ebrahim Sahraeian
,
Byung-Jun Yoon
Lecture Notes in Computer Science
7262
, 2012, pp. 239-240
Detecting SNP-induced structural changes in RNA: Application to disease studies
Raheleh Salari
,
Chava Kimchi-Sarfaty
,
Michael M. Gottesman
,
Teresa M. Przytycka
Lecture Notes in Computer Science
7262
, 2012, pp. 241-243
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