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Multiple genome alignment: Chaining algorithms revisited
Mohamed Ibrahim Abouelhoda
,
Enno Ohlebusch
Lecture Notes in Computer Science
2676
, 2003, pp. 1-16
Two-dimensional pattern matching with rotations
Amihood Amir
,
Ayelet Butman
,
Maxime Crochemore
,
Gad M. Landau
,
Malka Schaps
Lecture Notes in Computer Science
2676
, 2003, pp. 17-31
An improved algorithm for generalized comparison of minisatellites
Behshad Behzadi
,
Jean-Marc Steyaert
Lecture Notes in Computer Science
2676
, 2003, pp. 32-41
Optimal spaced seeds for hidden Markov models, with application to homologous coding regions
Bron̑a Brejová
,
Daniel G. Brown
,
Tomás̑ Vinaȓ
Lecture Notes in Computer Science
2676
, 2003, pp. 42-54
Fast lightweight suffix array construction and checking
Stefan Burkhardt
,
Juha Kärkkäinen
Lecture Notes in Computer Science
2676
, 2003, pp. 55-69
Distributed and paged suffix trees for large genetic databases
Raphaël Clifford
,
Marek Sergot
Lecture Notes in Computer Science
2676
, 2003, pp. 70-82
Analysis of tree edit distance algorithms
Serge Dulucq
,
Hélène Touzet
Lecture Notes in Computer Science
2676
, 2003, pp. 83-95
An exact and polynomial distance-based algorithm to reconstruct single copy tandem duplication trees
Olivier Elemento
,
Olivier Gascuel
Lecture Notes in Computer Science
2676
, 2003, pp. 96-108
Average-optimal multiple approximate string matching
Kimmo Fredriksson
,
Gonzalo Navarro
Lecture Notes in Computer Science
2676
, 2003, pp. 109-128
Optimal partitions of strings: A new class of Burrows-Wheeler compression algorithms
Raffaele Giancarlo
,
Marinella Sciortino
Lecture Notes in Computer Science
2676
, 2003, pp. 129-143
Haplotype inference by pure parsimony
Dan Gusfield
Lecture Notes in Computer Science
2676
, 2003, pp. 144-155
A simpler 1.5-approximation algorithm for sorting by transpositions
Tzvika Hartman
Lecture Notes in Computer Science
2676
, 2003, pp. 156-169
Efficient data structures and a new randomized approach for sorting signed permutations by reversals
Haim Kaplan
,
Elad Verbin
Lecture Notes in Computer Science
2676
, 2003, pp. 170-185
Linear-time construction of suffix arrays
Dong Kyue Kim
,
Jeong Seop Sim
,
Heejin Park
,
Kunsoo Park
Lecture Notes in Computer Science
2676
, 2003, pp. 186-199
Space efficient linear time construction of suffix arrays
Pang Ko
,
Srinivas Aluru
Lecture Notes in Computer Science
2676
, 2003, pp. 200-210
Tuning string matching for huge pattern sets
Jari Kytöjoki
,
Leena Salmela
,
Jorma Tarhio
Lecture Notes in Computer Science
2676
, 2003, pp. 211-224
Sparse LCS common substring alignment
Gad M. Landau
,
Baruch Schieber
,
Michal Ziv-Ukelson
Lecture Notes in Computer Science
2676
, 2003, pp. 225-236
On minimizing pattern splitting in multi-track string matching
Kjell Lemström
,
Veli Mäkinen
Lecture Notes in Computer Science
2676
, 2003, pp. 237-253
Alignment between two multiple alignments
Bin Ma
,
Zhuozhi Wang
,
Kaizhong Zhang
Lecture Notes in Computer Science
2676
, 2003, pp. 254-265
An effective algorithm for the peptide De Novo sequencing from MS/MS spectrum
Bin Ma
,
Kaizhong Zhang
,
Chengzhi Liang
Lecture Notes in Computer Science
2676
, 2003, pp. 266-277
Pattern discovery in RNA secondary structure using affix trees
Giancarlo Mauri
,
Giulio Pavesi
Lecture Notes in Computer Science
2676
, 2003, pp. 278-294
More efficient left-to-right pattern matching in non-sequential equational programs
Nadia Nedjah
,
Luiza de Macedo Mourelle
Lecture Notes in Computer Science
2676
, 2003, pp. 295-314
Complexities of the centre and median string problems
François Nicolas
,
Eric Rivals
Lecture Notes in Computer Science
2676
, 2003, pp. 315-327
Extracting approximate patterns
Johann Pelfrêne
,
Saïd Abdeddaïm
,
Joël Alexandre
Lecture Notes in Computer Science
2676
, 2003, pp. 328-347
A fully linear-time approximation algorithm for grammar-based compression
Hiroshi Sakamoto
Lecture Notes in Computer Science
2676
, 2003, pp. 348-360
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