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Sorting by reversals in subquadratic time
Eric Tannier
,
Marie-France Sagot
Lecture Notes in Computer Science
3109
, 2004, pp. 1-13
Computational problems in perfect phylogeny haplotyping: Xor-genotypes and tag SNPs
Tamar Barzuza
,
Jacques S. Beckmann
,
Ron Shamir
,
Itsik Pe'er
Lecture Notes in Computer Science
3109
, 2004, pp. 14-31
Sorting by length-weighted reversals: Dealing with signs and circularity
Firas Swidan
,
Michael A. Bender
,
Dongdong Ge
,
Simai He
,
Haodong Hu
,
Ron Y. Pinter
Lecture Notes in Computer Science
3109
, 2004, pp. 32-46
Optimizing multiple spaced seeds for homology search
Jinbo Xu
,
Daniel G. Brown
,
Ming Li
,
Bin Ma
Lecture Notes in Computer Science
3109
, 2004, pp. 47-58
Approximate labelled subtree homeomorphism
Ron Y. Pinter
,
Oleg Rokhlenko
,
Dekel Tsur
,
Michal Ziv-Ukelson
Lecture Notes in Computer Science
3109
, 2004, pp. 59-73
On the average sequence complexity
Svante Janson
,
Stefano Lonardi
,
Wojciech Szpankowski
Lecture Notes in Computer Science
3109
, 2004, pp. 74-88
Approximate point set pattern matching on sequences and planes
Tomoaki Suga
,
Shinichi Shimozono
Lecture Notes in Computer Science
3109
, 2004, pp. 89-101
Finding biclusters by random projections
Stefano Lonardi
,
Wojciech Szpankowski
,
Qiaofeng Yang
Lecture Notes in Computer Science
3109
, 2004, pp. 102-116
Real-time string matching in sublinear space
Leszek Ga̧sieniec
,
Roman Kolpakov
Lecture Notes in Computer Science
3109
, 2004, pp. 117-129
On the
k
-closest substring and
k
-consensus pattern problems
Yishan Jiao
,
Jingyi Xu
,
Ming Li
Lecture Notes in Computer Science
3109
, 2004, pp. 130-144
A trie-based approach for compacting automata
Maxime Crochemore
,
Chiara Epifanio
,
Roberto Grossi
,
Filippo Mignosi
Lecture Notes in Computer Science
3109
, 2004, pp. 145-158
A simple optimal representation for balanced parentheses
Richard F. Geary
,
Naila Rahman
,
Rajeev Raman
,
Venkatesh Raman
Lecture Notes in Computer Science
3109
, 2004, pp. 159-172
Two algorithms for LCS consecutive suffix alignment
Gad M. Landau
,
Eugene Myers
,
Michal Ziv-Ukelson
Lecture Notes in Computer Science
3109
, 2004, pp. 173-193
Efficient algorithms for finding submasses in weighted strings
Nikhil Bansal
,
Mark Cieliebak
,
Zsuzsanna Lipták
Lecture Notes in Computer Science
3109
, 2004, pp. 194-204
Maximum agreement and compatible supertrees
Vincent Berry
,
François Nicolas
Lecture Notes in Computer Science
3109
, 2004, pp. 205-219
Polynomial-time algorithms for the ordered maximum agreement subtree problem
Anders Dessmark
,
Jesper Jansson
,
Andrzej Lingas
,
Eva-Marta Lundell
Lecture Notes in Computer Science
3109
, 2004, pp. 220-229
Small phylogeny problem: Character evolution trees
Arvind Gupta
,
Ján Man̑uch
,
Ladislav Stacho
,
Chenchen Zhu
Lecture Notes in Computer Science
3109
, 2004, pp. 230-243
The protein sequence design problem in canonical model on 2D and 3D lattices
Piotr Berman
,
Bhaskar DasGupta
,
Dhruv Mubayi
,
Robert Sloan
,
György Turán
,
Yi Zhang
Lecture Notes in Computer Science
3109
, 2004, pp. 244-253
A computational model for RNA multiple structural alignment
Eugene Davydov
,
Serafim Batzoglou
Lecture Notes in Computer Science
3109
, 2004, pp. 254-269
Computational design of new and recombinant selenoproteins
Rolf Backofen
,
Anke Busch
Lecture Notes in Computer Science
3109
, 2004, pp. 270-284
A combinatorial shape matching algorithm for rigid protein docking
Vicky Choi
,
Navin Goyal
Lecture Notes in Computer Science
3109
, 2004, pp. 285-296
Multi-seed lossless filtration
Gregory Kucherov
,
Laurent Noé
,
Mikhail Roytberg
Lecture Notes in Computer Science
3109
, 2004, pp. 297-310
New results for the 2-interval pattern problem
Guillaume Blin
,
Guillaume Fertin
,
Stéphane Vialette
Lecture Notes in Computer Science
3109
, 2004, pp. 311-322
A linear-time algorithm for computing translocation distance between signed genomes
Guojun Li
,
Xingqin Qi
,
Xiaoli Wang
,
Binhai Zhu
Lecture Notes in Computer Science
3109
, 2004, pp. 323-332
Sparse normalized local alignment
Nadav Efraty
,
Gad M. Landau
Lecture Notes in Computer Science
3109
, 2004, pp. 333-346
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