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Sharper upper and lower bounds for an approximation scheme for CONSENSUS-PATTERN
Bron̑a Brejová
,
Daniel G. Brown
,
Ian M. Harrower
,
Alejandro López-Ortiz
,
Tomás̑ Vinaȓ
Lecture Notes in Computer Science
3537
, 2005, pp. 1-10
On the longest common rigid subsequence problem
Bin Ma
,
Kaizhong Zhang
Lecture Notes in Computer Science
3537
, 2005, pp. 11-20
Text indexing with errors
Moritz G. Maaß
,
Johannes Nowak
Lecture Notes in Computer Science
3537
, 2005, pp. 21-32
A new compressed suffix tree supporting fast search and its construction algorithm using optimal working space
Dong Kyue Kim
,
Heejin Park
Lecture Notes in Computer Science
3537
, 2005, pp. 33-44
Succinct suffix arrays based on run-length encoding
Veli Mäkinen
,
Gonzalo Navarro
Lecture Notes in Computer Science
3537
, 2005, pp. 45-56
Linear-time construction of compressed suffix arrays using
o(n \log n)
-bit working space for large alphabets
Joong Chae Na
Lecture Notes in Computer Science
3537
, 2005, pp. 57-67
Faster algorithms for
\delta,\gamma
-matching and related problems
Peter Clifford
,
Raphaël Clifford
,
Costas Iliopoulos
Lecture Notes in Computer Science
3537
, 2005, pp. 68-78
A fast algorithm for approximate string matching on gene sequences
Zheng Liu
,
Xin Chen
,
James Borneman
,
Tao Jiang
Lecture Notes in Computer Science
3537
, 2005, pp. 79-90
Approximate matching in the
L_1
metric
Amihood Amir
,
Ohad Lipsky
,
Ely Porat
,
Julia Umanski
Lecture Notes in Computer Science
3537
, 2005, pp. 91-103
An efficient algorithm for generating super condensed neighborhoods
Luís M.S. Russo
,
Arlindo L. Oliveira
Lecture Notes in Computer Science
3537
, 2005, pp. 104-115
The median problem for the reversal distance in circular bacterial genomes
Enno Ohlebusch
,
Mohamed Ibrahim Abouelhoda
,
Kathrin Hockel
,
Jan Stallkamp
Lecture Notes in Computer Science
3537
, 2005, pp. 116-127
Using PQ trees for comparative genomics
Gad M. Landau
,
Laxmi Parida
,
Oren Weimann
Lecture Notes in Computer Science
3537
, 2005, pp. 128-143
Hardness of optimal spaced seed design
François Nicolas
,
Eric Rivals
Lecture Notes in Computer Science
3537
, 2005, pp. 144-155
Weighted directed word graph
Meng Zhang
,
Liang Hu
,
Qiang Li
,
Jiubin Ju
Lecture Notes in Computer Science
3537
, 2005, pp. 156-167
Construction of Aho Corasick automaton in linear time for integer alphabets
Shiri Dori
,
Gad M. Landau
Lecture Notes in Computer Science
3537
, 2005, pp. 168-177
An extension of the Burrows Wheeler Transform and applications to sequence comparison and data compression
Sabrina Mantaci
,
Antonio Restivo
,
G. Rosone
,
Marinella Sciortino
Lecture Notes in Computer Science
3537
, 2005, pp. 178-189
DNA compression challenge revisited: A dynamic programming approach
Behshad Behzadi
,
Fabrice Le Fessant
Lecture Notes in Computer Science
3537
, 2005, pp. 190-200
On the complexity of sparse exon assembly
Carmel Kent
,
Gad M. Landau
,
Michal Ziv-Ukelson
Lecture Notes in Computer Science
3537
, 2005, pp. 201-218
An upper bound on the hardness of exact matrix based motif discovery
Paul Horton
,
Wataru Fujibuchi
Lecture Notes in Computer Science
3537
, 2005, pp. 219-228
Incremental inference of relational motifs with a degenerate alphabet
Nadia Pisanti
,
Henry Soldano
,
Mathilde Carpentier
Lecture Notes in Computer Science
3537
, 2005, pp. 229-240
Speeding up parsing of biological context-free grammars
Daniel Fredouille
,
Christopher H. Bryant
Lecture Notes in Computer Science
3537
, 2005, pp. 241-256
A new periodicity lemma
Kangmin Fan
,
William F. Smyth
,
R.J. Simpson
Lecture Notes in Computer Science
3537
, 2005, pp. 257-265
Two dimensional parameterized matching
Carmit Hazay
,
Moshe Lewenstein
,
Dekel Tsur
Lecture Notes in Computer Science
3537
, 2005, pp. 266-279
An optimal algorithm for online square detection
Gen-Huey Chen
,
Jin-Ju Hong
,
Hsueh-I Lu
Lecture Notes in Computer Science
3537
, 2005, pp. 280-287
A simple fast hybrid pattern-matching algorithm
Frantisek Franek
,
Christopher G. Jennings
,
William F. Smyth
Lecture Notes in Computer Science
3537
, 2005, pp. 288-297
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