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Asynchronous pattern matching
Amihood Amir
Lecture Notes in Computer Science
4009
, 2006, pp. 1-10
SNP and haplotype analysis - Algorithms and applications
Eran Halperin
Lecture Notes in Computer Science
4009
, 2006, pp. 11-11
Identifying co-referential names across large corpora
Levon Lloyd
,
Andrew Mehler
,
Steven Skiena
Lecture Notes in Computer Science
4009
, 2006, pp. 12-23
Adaptive searching in succinctly encoded binary relations and tree-structured documents
Jérémy Barbay
,
Alexander Golynski
,
J. Ian Munro
,
S. Srinivasa Rao
Lecture Notes in Computer Science
4009
, 2006, pp. 24-35
Theoretical and practical improvements on the RMQ-problem, with applications to LCA and LCE
Johannes Fischer
,
Volker Heun
Lecture Notes in Computer Science
4009
, 2006, pp. 36-48
A linear size index for approximate pattern matching
Ho-Leung Chan
,
Tak-Wah Lam
,
Wing-Kin Sung
,
Siu-Lung Tam
,
Swee-Seong Wong
Lecture Notes in Computer Science
4009
, 2006, pp. 49-59
On-line linear-time construction of word suffix trees
Shunsuke Inenaga
,
Masayuki Takeda
Lecture Notes in Computer Science
4009
, 2006, pp. 60-71
Obtaining provably good performance from suffix trees in secondary storage
Pang Ko
,
Srinivas Aluru
Lecture Notes in Computer Science
4009
, 2006, pp. 72-83
Geometric suffix tree: A new index structure for protein 3-D structures
Tetsuo Shibuya
Lecture Notes in Computer Science
4009
, 2006, pp. 84-93
New bounds for motif finding in strong instances
Bron̑a Brejová
,
Daniel G. Brown
,
Ian M. Harrower
,
Tomás̑ Vinaȓ
Lecture Notes in Computer Science
4009
, 2006, pp. 94-105
Fingerprint clustering with bounded number of missing values
Paola Bonizzoni
,
Gianluca Della Vedova
,
Riccardo Dondi
,
Giancarlo Mauri
Lecture Notes in Computer Science
4009
, 2006, pp. 106-116
Tiling an interval of the discrete line
Olivier Bodini
,
Eric Rivals
Lecture Notes in Computer Science
4009
, 2006, pp. 117-128
Common substrings in random strings
Eric Blais
,
Mathieu Blanchette
Lecture Notes in Computer Science
4009
, 2006, pp. 129-140
On the repeat-annotated phylogenetic tree reconstruction problem
Firas Swidan
,
Michal Ziv-Ukelson
,
Ron Y. Pinter
Lecture Notes in Computer Science
4009
, 2006, pp. 141-152
Subsequence combinatorics and applications to microarray production, DNA sequencing and chaining algorithms
Sven Rahmann
Lecture Notes in Computer Science
4009
, 2006, pp. 153-164
Solving the maximum agreement subtree and the maximum compatible tree problems on many bounded degree trees
Sylvain Guillemot
,
François Nicolas
Lecture Notes in Computer Science
4009
, 2006, pp. 165-176
An improved algorithm for the macro-evolutionary phylogeny problem
Behshad Behzadi
,
Martin Vingron
Lecture Notes in Computer Science
4009
, 2006, pp. 177-187
Property matching and weighted matching
Amihood Amir
,
Eran Chencinski
,
Costas Iliopoulos
,
Tsvi Kopelowitz
,
Hui Zhang
Lecture Notes in Computer Science
4009
, 2006, pp. 188-199
Faster two dimensional scaled matching
Amihood Amir
,
Eran Chencinski
Lecture Notes in Computer Science
4009
, 2006, pp. 200-210
Approximation of RNA multiple structural alignment
Marcin Kubica
,
Romeo Rizzi
,
Stéphane Vialette
,
Tomasz Waleń
Lecture Notes in Computer Science
4009
, 2006, pp. 211-222
Finding common RNA pseudoknot structures in polynomial time
Patricia A. Evans
Lecture Notes in Computer Science
4009
, 2006, pp. 223-232
A compact mathematical programming formulation for DNA motif finding
Carl Kingsford
,
Elena Zaslavsky
,
Mona Singh
Lecture Notes in Computer Science
4009
, 2006, pp. 233-245
Local alignment of RNA sequences with arbitrary scoring schemes
Rolf Backofen
,
Danny Hermelin
,
Gad M. Landau
,
Oren Weimann
Lecture Notes in Computer Science
4009
, 2006, pp. 246-257
An
O(n^{3/2}\sqrt {\log (n}))
algorithm for sorting by reciprocal translocations
Michal Ozery-Flato
,
Ron Shamir
Lecture Notes in Computer Science
4009
, 2006, pp. 258-269
Longest common subsequences in permutations and maximum cliques in circle graphs
Alexander Tiskin
Lecture Notes in Computer Science
4009
, 2006, pp. 270-281
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