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Gene regulation, protein networks and disease: A computational perspective
Ron Shamir
Lecture Notes in Computer Science
7354
, 2012, pp. 1-1
Wavelet trees for all
Gonzalo Navarro
Lecture Notes in Computer Science
7354
, 2012, pp. 2-26
The maximum number of squares in a tree
Maxime Crochemore
,
Costas S. Iliopoulos
,
Tomasz Kociumaka
,
Marcin Kubica
,
Jakub Radoszewski
,
Wojciech Rytter
,
Wojciech Tyczyński
,
Tomasz Waleń
Lecture Notes in Computer Science
7354
, 2012, pp. 27-40
Faster and simpler minimal conflicting set identification
Aïda Ouangraoua
,
Mathieu Raffinot
Lecture Notes in Computer Science
7354
, 2012, pp. 41-55
Partitioning into colorful components by minimum edge deletions
Sharon Bruckner
,
Falk Hüffner
,
Christian Komusiewicz
,
Rolf Niedermeier
,
Sven Thiel
,
Johannes Uhlmann
Lecture Notes in Computer Science
7354
, 2012, pp. 56-69
Approximation algorithms and hardness results for shortest path based graph orientations
Dima Blokh
,
Danny Segev
,
Roded Sharan
Lecture Notes in Computer Science
7354
, 2012, pp. 70-82
Constant-time word-size string matching
Dany Breslauer
,
Leszek Ga̧sieniec
,
Roberto Grossi
Lecture Notes in Computer Science
7354
, 2012, pp. 83-96
Pattern matching in multiple streams
Raphaël Clifford
,
Markus Jalsenius
,
Ely Porat
,
Benjamin Sach
Lecture Notes in Computer Science
7354
, 2012, pp. 97-109
An efficient linear pseudo-minimization algorithm for Aho-Corasick automata
Omar AitMous
,
Frédérique Bassino
,
Cyril Nicaud
Lecture Notes in Computer Science
7354
, 2012, pp. 110-123
Efficient two-dimensional pattern matching with scaling and rotation and higher-order interpolation
Christian Hundt
,
Florian Wendland
Lecture Notes in Computer Science
7354
, 2012, pp. 124-137
Hardness of longest common subsequence for sequences with bounded run-lengths
Guillaume Blin
,
Laurent Bulteau
,
Minghui Jiang
,
Pedro J. Tejada
,
Stéphane Vialette
Lecture Notes in Computer Science
7354
, 2012, pp. 138-148
Near linear time construction of an approximate index for all maximum consecutive sub-sums of a sequence
Ferdinando Cicalese
,
Eduardo Laber
,
Oren Weimann
,
Raphael Yuster
Lecture Notes in Computer Science
7354
, 2012, pp. 149-158
The complexity of string partitioning
Anne Condon
,
Ján Man̑uch
,
Chris Thachuk
Lecture Notes in Computer Science
7354
, 2012, pp. 159-172
Towards an optimal space-and-query-time index for top-
k
document retrieval
Wing-Kai Hon
,
Rahul Shah
,
Sharma V. Thankachan
Lecture Notes in Computer Science
7354
, 2012, pp. 173-184
Document listing for queries with excluded pattern
Wing-Kai Hon
,
Rahul Shah
,
Sharma V. Thankachan
,
Jeffrey Scott Vitter
Lecture Notes in Computer Science
7354
, 2012, pp. 185-195
Cross-document pattern matching
Gregory Kucherov
,
Yakov Nekrich
,
Tatiana Starikovskaya
Lecture Notes in Computer Science
7354
, 2012, pp. 196-207
FEMTO: Fast search of large sequence collections
Michael P. Ferguson
Lecture Notes in Computer Science
7354
, 2012, pp. 208-219
Speeding up
q
-gram mining on grammar-based compressed texts
Keisuke Goto
,
Hideo Bannai
,
Shunsuke Inenaga
,
Masayuki Takeda
Lecture Notes in Computer Science
7354
, 2012, pp. 220-231
Simple and efficient LZW-compressed multiple pattern matching
Paweƚ Gawrychowski
Lecture Notes in Computer Science
7354
, 2012, pp. 232-242
Computing the Burrows-Wheeler transform of a string and its reverse
Enno Ohlebusch
,
Timo Beller
,
Mohamed I. Abouelhoda
Lecture Notes in Computer Science
7354
, 2012, pp. 243-256
Efficient algorithm for circular Burrows-Wheeler transform
Wing-Kai Hon
,
Tsung-Han Ku
,
Chen-Hua Lu
,
Rahul Shah
,
Sharma V. Thankachan
Lecture Notes in Computer Science
7354
, 2012, pp. 257-268
Least random suffix/prefix matches in output-sensitive time
Niko Välimäki
Lecture Notes in Computer Science
7354
, 2012, pp. 269-279
Compressed string dictionary look-up with edit distance one
Djamal Belazzougui
,
Rossano Venturini
Lecture Notes in Computer Science
7354
, 2012, pp. 280-292
Time-space trade-offs for longest common extensions
Philip Bille
,
Inge Li Grtz
,
Benjamin Sach
,
Hjalte Wedel Vildhj
Lecture Notes in Computer Science
7354
, 2012, pp. 293-305
Local exact pattern matching for non-fixed RNA structures
Mika Amit
,
Rolf Backofen
,
Steffen Heyne
,
Gad M. Landau
,
Mathias Möhl
,
Christina Schmiedl
,
Sebastian Will
Lecture Notes in Computer Science
7354
, 2012, pp. 306-320
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