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Fakultät für Informatik - Technische Universität München

Lehrstuhl für Effiziente Algorithmen

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Oberseminar Theoretische Informatik Sommersemester 2006

Brauer, Mayr, Scheideler, Veith

Mittwochs um 14:00 Uhr s.t., Raum MI 03.11.018


*Mi, 31.05.2006
Mark Borodovsky
Open Problems in Computational Genomics
I will outline some open problems that exist in the major research directions of computational genomics that atre concerned about protein and RNA gene finding, protein function prediction, sequence based reconstruction of evolutionary relationships of genes and proteins, computational prediction of gene and protein interactions. I will discuss in more details the problems relagted to gene prediction in novel eukaryotic genomes.
*Mi, 19.07.2006
Dr. Markus Holzer
The Size of Higman-Haines Sets
We show that for the family of Church-Rosser languages the Higman-Haines set, that is the set of all scattered subwords of a given language, cannot be effectively constructed, although this set is regular for {\em any\/} language. This nicely contrasts the result on the effectiveness of the Higman-Haines set for the family of context-free languages. The non-effectiveness is based on a non-recursive trade-off result between the language description mechanism of Church-Rosser languages and the corresponding Higman-Haines set, which in turn is also valid for all supersets of the language family under consideration, and in particular for the family of recursively enumerable languages. Finally, for the other end of the Chomsky hierarchy, namely for the family of regular languages, we prove an upper and a matching lower bound on the size of the Higman-Haines set in terms of non-deterministic finite automata. This is a joint work with Martin Kutrib from the Universität Giessen

Stefan Eckhardt