| Sunday, October 12 (GSF Neuherberg and TUM Garching) | |||
|---|---|---|---|
| 11:00-18:00 | Tutorials (at GSF Research Center, Neuherberg) | ||
| 11:00-14:00 |
Genome Annotation M. Münsterkötter, S. Rudd, A. Ruepp, V. Stümpflen, MIPS-Group, GSF |
Structural Genomics D. Frishman, TUM |
The Helmholtz Network for Bioinformatics DKFZ Heidelberg |
| 14:00-18:00 |
14:00-16:00 Teaching R. Giegerich, University of Bielefeld |
15:00-18:00 Promoter Analysis T. Werner, Genomatix GmbH |
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| 13:00-18:00 | Society Sessions (at GSF Research Center, Neuherberg) | ||
| GBM (13:00-14:00) | NBCC (14:30-16:00) | DECHEMA (16:00-18:00) | |
| 18:00 | Transfer to TU München, Garching | ||
| 17:00-19:00 | Registration (at TUM Garching) | ||
| 19:30 | Welcome Address Lecture Hall 1 |
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| Opening Lecture Lecture Hall 1 Computational Proteomics: Genome-Scale Analysis of Protein Structure, Function, and Evolution M. Gerstein, Yale University |
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| Monday, October 13 (TUM Garching) | ||
|---|---|---|
| 08:30-09:15 |
Invited Lecture Lecture Hall 1 A Structural Perspective on Genome Evolution C. Orengo, University College London |
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| 09:15-10:15 | Protein and RNA Structures I Lecture Hall 1 |
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| 09:15-09:45 | N. Weskamp, D. Kuhn,
E. Hüllermeier, G. Klebe:
Efficient Similarity Search in Protein Structure Databases: Improving Clique-Detection through Clique Hashing |
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| 09:45-10:15 | A.C. Tan, D. Gilbert, Y. Deville:
Integrative Machine Learning Approach for Multi-Class SCOP Protein Fold Classification |
|
| 10:15-10:45 | Coffee Break / Poster Viewing | |
| 10:45-12:45 | Protein and RNA Structures II Lecture Hall 1 |
Bioinformatics of Evolution Lecture Hall 2 |
| 10:45-11:15 | J. Viksna, D. Gilbert, G. Torrance:
Protein Structure Comparison Based on Profiles of Topological Motifs: A Feasible Way to Deal with Information from Negative Examples |
P. Arndt, T. Hwa:
Regional and Time-Resolved Mutation Pattern of the Human Genome |
| 11:15-11:45 | P. Dafas, D. Bolser, J. Gomoluch, J. Park,
M. Schroeder:
Fast and Efficient Computation of Domain-Domain Interactions from Known Protein Structures in the PDB |
T. Müller, S. Rahmann, T. Dandekar,
M. Wolf:
Robust Estimation of the Phylogeny of Chlorophyceae (Chlorophyta) Based on Profile Distances |
| 11:45-12:15 | I. Abfalter, C. Flamm, P. Stadler:
Design of Multi-Stable Nucleic Acid Sequences |
M. Lercher, L. Hurst:
Gene Expression, Gene Clusters, and Genomic Regionality in Rates of Evolution |
| 12:15-12:45 | B. Voss, R. Giegerich:
Prediction of Conformational Switching in RNA |
I. Hofacker, P. Stadler, R. Stocsits:
Conserved RNA Secondary Structures in Viral Genomes: A Survey |
| 12:45-13:30 | Poster Viewing / Lunch | |
| Society Session (GI, 12:45-13:30) | ||
| 13:30-14:15 |
Invited Lecture Lecture Hall 1
Integrative Genomics and Bioinformatics: From Gene to Function and Back H. Westerhoff, Vrije Universiteit Amsterdam |
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| 14:15-15:15 | Analysis and Interpretation of Microarray Data I Lecture Hall 1 |
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| 14:15-14:45 | F. Schubert, J. Mueller, B. Fritz,
P. Lichter, R. Eils:
Understanding the Classification of Tumors with a Support Vector Machine: A Case-Based Explanation Scheme |
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| 14:45-15:15 | D. Kreil, R. Auburn, L. Meadows,
S. Russell, G. Micklem:
Quantitative Microarray Spot Profile Optimization: A Systematic Evaluation of Buffer/Slide Combinations. |
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| 15:15-15:45 | Coffee Break / Poster Viewing | |
| 15:45-16:45 | Analysis and Interpretation of Microarray Data II Lecture Hall 1 |
Metabolites and Metabolic Networks Lecture Hall 2 |
| 15:45-16:15 | D. Klingbiel, H. Witt, B. Ivandic, D. Weichenhan,
H. Katus, P. Ruiz, L. Duembgen:
Singular Value Decomposition for Feature Selection in Gene Chips |
A. Flöter, J. Nicolas, T. Schaub,
J. Selbig:
Threshold Extraction in Metabolite Concentration Data |
| 16:15-16:45 | A. Antonov, I. Tetko, M. Mader, J. Budczies,
W. Mewes:
Exploiting Gene Interaction Information from Microarray Expression Data for Cancer Classification |
S. Schuster, S. Klamt, J. Stelling:
Making Predictions About Robustness and Flexibility from Metabolic Network Structure |
| 16:45-19:15 | Lecture Hall 1 Presentations of Bioinformatics Centers |
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| 19:30 | Shuttle Service to Conference Dinner | |
| 20:00 | Conference Dinner / Evening Event | |
| 24:00 | Bus Shuttle to Hotels | |
| Tuesday, October 14 (TUM Garching) | ||
| 08:30-09:15 |
Invited Lecture Lecture Hall 1 Bacterial Annotation Tools O. White, The Institute for Genomic Research |
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| 09:15-10:15 | Analysis and Interpretation of Microarray Data III Lecture Hall 1 |
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| 09:15-09:45 | R. König, R. Eils:
Gene Expression Analysis on Biochemical Networks with the Potts Spin Model |
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| 09:45-10:15 | F. Sohler, D. Hanisch, R. Zimmer:
New Methods for Joint Analysis of Biological Networks and Expression Data |
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| 10:15-10:45 | Coffee Break / Poster Viewing | |
| 10:45-12:45 | Sequence Analysis I Lecture Hall 1 |
Biological Applications Lecture Hall 2 |
| 10:45-11:15 | S. Siebert, R. Backofen:
MARNA: A Server for Multiple Alignment of RNAs |
P. Pagel, W. Mewes, D. Frishman:
Conservation of Protein-Protein Interactions among Ascomycota Species |
| 11:15-11:45 | T. Meinel, M. Vingron, A. Krause:
The SYSTERS Protein Family Database: Taxon-related Protein Family Size Distributions and Singleton Frequencies |
C. Voigt, S. Möller, S. Ibrahim,
P. Serrano-Fernández:
Non-Linear Conversion between Genetic and Physical Chromosomal Distances |
| 11:45-12:15 | C. Bannert, J. Stoye:
Evaluation of the Jumping Alignment Algorithm with Artificial and Biological Data |
J. Galle, M. Loeffler, D. Drasdo:
An Individual Cell-Based Model of the Growth Regulation of Epithelial Cell-Populations In-Vitro |
| 12:15-12:45 | A. Kel, Y. Tikunov, N. Voss, E. Wingender:
Recognition of Multiple Patterns in Unaligned Sets of Sequences: Comparison of Kernel Clustering Method with Other Methods |
M. Swat, A. Kel, S. Kielbasa, H. Herzel:
Modeling the G1/S Transition in Mammals - Bifurcation Analysis of Elementary Modules |
| 12:45-14:00 | Poster Viewing / Lunch | |
| 14:00-14:35 |
Invited Lecture Lecture Hall 1 On the Evolution of Proteins from Peptides A. Lupas, MPI for Developmental Biology |
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| 14:45-15:45 | Sequence Analysis II Lecture Hall 1 |
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| 14:45-15:15 | F. Frommlet, A. Futschik, M. Bogdan:
On the Significance of Sequence Alignments when using Multiple Scoring Matrices |
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| 15:15-15:45 | S. Rensing, D. Lang, R. Reski:
In Silico Prediction of UTR Repeats using Clustered EST Data |
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| 15:45-16:15 | Coffee Break / Poster Viewing | |
| 16:15-17:15 | Genetics Related Bioinformatics Lecture Hall 1 |
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| 16:15-16:45 | T. Liu, W. Sung, P. Mao, A. Mittal:
Tag SNP Selection by Brute-Force and Heuristic Algorithms |
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| 16:45-17:15 | J. Hansen, T. Floss, P. van Sloun,
C. Seisenberger, M. Meidlinger, E. Füchtbauer,
F. Vauti, H. Arnold, F. Schnütgen,
H. von Melchner, P. Ruiz, W. Wurst:
Functional Analysis of the Mammalian Genome by Large Scale Gene Trap Mutagenesis |
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| 17:15 | Concluding Remarks Lecture Hall 1 |
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The second announcement is also electronically available.